Software & Materials

Code, tutorials and supplementary material accompanying papers

2024 — INLAComp

• Manuscript: A flexible Bayesian tool for CoDa mixed models: logistic-normal distribution with Dirichlet covariance
• R package: INLAComp
• Tutorials:
  1. Fitting LNDMs with fixed effects
  2. Fitting spatial LNDMs — a simulation
  3. Fitting LNDMs with fixed and random effects — a real problem

2023 — dirinla

• Manuscript: The Integrated Nested Laplace Approximation for Fitting Dirichlet Regression Models (arXiv)
• R package: dirinla
• Tutorials:
  1. Fitting Dirichlet regression with fixed effects
  2. Fitting Dirichlet regression with random effects
  3. Simulation results using fixed and i.i.d. random effects

2021 — Plant epidemiology

• Manuscript: Modeling Inoculum Availability of Plurivorosphaerella nawae in Persimmon Leaf Litter with Bayesian Beta Regression
• R code: betapathogen
• Tutorial: Fitting a mixed model for inoculum availability

2019 — Arabidopsis thaliana

• Manuscript: A hierarchical Bayesian Beta regression approach to study the effects of geographical genetic structure and spatial autocorrelation on species distribution range shifts
• Code & data: Zenodo archive